HL_3J9M_051

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCAACAAA

Length

8 nucleotides

Bulged bases

3J9M|1|AA|C|1120, 3J9M|1|AA|A|1125

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_051 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2448

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

3J9M|1|AA|U|1115
3J9M|1|AA|C|1120
3J9M|1|AA|A|1121
3J9M|1|AA|A|1122
3J9M|1|AA|C|1123
3J9M|1|AA|A|1124
3J9M|1|AA|A|1125
3J9M|1|AA|A|1126

Current chains

Chain AA

12S rRNA

Nearby chains

Chain A2

mS37

Chain AB

uS2m

Chain AD

uS5m

Chain AE

bS6m

Chain AS

mS23