HL_3J9M_057

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUGAAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_057 not in the Motif Atlas

Geometric match to HL_4FRN_005

Geometric discrepancy: 0.1624

The information below is about HL_4FRN_005

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

3J9M|1|AA|A|1399
3J9M|1|AA|U|1400
3J9M|1|AA|G|1401
3J9M|1|AA|A|1402
3J9M|1|AA|A|1403
3J9M|1|AA|A|1404
3J9M|1|AA|U|1407

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AK

uS14m

Chain AZ

mS33