HL_3J9M_058

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUAGAGUGC

Length

11 nucleotides

Bulged bases

3J9M|1|AA|U|1448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22130.1

Basepair signature

cWW-cWW-R-R-R-R-R

Number of instances in this motif group

7

Unit IDs

3J9M|1|AA|G|1440
3J9M|1|AA|A|1441
3J9M|1|AA|G|1442
3J9M|1|AA|U|1443
3J9M|1|AA|A|1444
3J9M|1|AA|G|1445
3J9M|1|AA|A|1446
3J9M|1|AA|G|1447
3J9M|1|AA|U|1448
3J9M|1|AA|G|1449
3J9M|1|AA|C|1450

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

uS9m

Chain AH

uS10m

Chain AK

uS14m

Chain AZ

mS33