HL_3J9M_061

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAAA

Length

6 nucleotides

Bulged bases

3J9M|1|B|U|1614

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_061 not in the Motif Atlas

Geometric match to HL_5B63_003

Geometric discrepancy: 0.2545

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

3J9M|1|B|U|1613
3J9M|1|B|U|1614
3J9M|1|B|A|1615
3J9M|1|B|A|1616
3J9M|1|B|A|1621
3J9M|1|B|A|1622

Current chains

Chain B

mt-tRNAVal

Nearby chains

Chain 6

mL38

Chain P

uL18m