HL_3J9W_008

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88741.1

Basepair signature

cWW-cWW-R-R-tWH-R-tWH-R-R-R

Number of instances in this motif group

3

Unit IDs

3J9W|1|AA|G|328
3J9W|1|AA|A|329
3J9W|1|AA|C|330
3J9W|1|AA|U|331
3J9W|1|AA|G|332
3J9W|1|AA|A|333
3J9W|1|AA|G|334
3J9W|1|AA|A|335
3J9W|1|AA|C|336
3J9W|1|AA|A|337
3J9W|1|AA|C|338
3J9W|1|AA|G|339
3J9W|1|AA|G|340
3J9W|1|AA|C|341

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein bS20