Motif HL_88741.1 Version HL_88741.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-10 | 4-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J9W_008 | 3J9W | 0.1622 | 0 | AA | SSU rRNA | G | 328 | A | 329 | C | 330 | U | 331 | G | 332 | A | 333 | G | 334 | A | 335 | C | 336 | A | 337 | C | 338 | G | 339 | G | 340 | C | 341 | cWW | cWW | tWH | tWH |
| 2 | HL_4V4Q_111 | 4V4Q | 0.0000 | 0 | CA | SSU rRNA | A | 320 | A | 321 | C | 322 | U | 323 | G | 324 | A | 325 | G | 326 | A | 327 | C | 328 | A | 329 | C | 330 | G | 331 | G | 332 | U | 333 | cWW | cWW | tWH | tWH |
| 3 | HL_1FJG_008 | 1FJG | 0.1498 | 0 | A | SSU rRNA | C | 320 | A | 321 | C | 322 | U | 323 | G | 324 | A | 325 | G | 326 | A | 327 | C | 328 | A | 329 | C | 330 | G | 331 | G | 332 | G | 333 | cWW | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUGAGACACGGC | 1 |
| AACUGAGACACGGU | 1 |
| CACUGAGACACGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUGAGACACGG | 3 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R-tWH-R-tWH-R-R-R
- Heat map statistics
- Min 0.15 | Avg 0.11 | Max 0.20
Coloring options: