HL_3J9W_021

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

3J9W|1|AA|G|981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62686.1

Basepair signature

cWW-R-R-R-R-R-R

Number of instances in this motif group

10

Unit IDs

3J9W|1|AA|G|973
3J9W|1|AA|A|974
3J9W|1|AA|A|975
3J9W|1|AA|G|976
3J9W|1|AA|C|977
3J9W|1|AA|A|978
3J9W|1|AA|A|979
3J9W|1|AA|C|980
3J9W|1|AA|G|981
3J9W|1|AA|C|982

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein uS9

Chain AJ

30S ribosomal protein uS10

Chain AX

Transfer RNA; tRNA