HL_3J9W_030

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUCAGCAUGC

Length

11 nucleotides

Bulged bases

3J9W|1|AA|U|1373

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22130.1

Basepair signature

cWW-cWW-R-R-R-R-R

Number of instances in this motif group

7

Unit IDs

3J9W|1|AA|G|1365
3J9W|1|AA|A|1366
3J9W|1|AA|U|1367
3J9W|1|AA|C|1368
3J9W|1|AA|A|1369
3J9W|1|AA|G|1370
3J9W|1|AA|C|1371
3J9W|1|AA|A|1372
3J9W|1|AA|U|1373
3J9W|1|AA|G|1374
3J9W|1|AA|C|1375

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein uS9

Chain AJ

30S ribosomal protein uS10

Chain AN

30S ribosomal protein uS14