HL_3J9W_033

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGUUGGUUAG

Length

11 nucleotides

Bulged bases

3J9W|1|AX|G|18, 3J9W|1|AX|U|19, 3J9W|1|AX|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04124.1

Basepair signature

cWW-cWS-R-R-R-R-R

Number of instances in this motif group

9

Unit IDs

3J9W|1|AX|C|13
3J9W|1|AX|A|14
3J9W|1|AX|G|15
3J9W|1|AX|U|16
3J9W|1|AX|U|17
3J9W|1|AX|G|17|||A
3J9W|1|AX|G|18
3J9W|1|AX|U|19
3J9W|1|AX|U|20
3J9W|1|AX|A|21
3J9W|1|AX|G|22

Current chains

Chain AX

tRNA-Asp

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S ribosomal protein uL5