Motif HL_04124.1 Version HL_04124.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 8-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5IMQ_001 | 5IMQ | 0.5665 | 2 | tRNA D-loop (H) | 4 | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | U | 20 | A | 21 | G | 22 | cWW | |||
| 2 | HL_3J9W_033 | 3J9W | 0.4815 | 2 | tRNA D-loop (H) | AX | tRNA | C | 13 | A | 14 | G | 15 | U | 16 | U | 17 | G | 17|||A | U | 20 | A | 21 | G | 22 | cWW | cWS | ||
| 3 | HL_4WT8_215 | 4WT8 | 0.4262 | 2 | tRNA D-loop | D4 | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 18 | U | 21 | A | 22 | G | 23 | cWW | ncWS | ||
| 4 | HL_4V9B_033 | 4V9B | 0.3694 | 2 | tRNA D-loop (H) | AC | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | C | 17|||A | U | 20 | A | 21 | G | 22 | cWW | cWS | ||
| 5 | HL_4V9R_033 | 4V9R | 0.3119 | 2 | tRNA D-loop (H) | AX | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | U | 20 | A | 21 | G | 22 | cWW | cWS | ||
| 6 | HL_4V9Q_213 | 4V9Q | 0.0000 | 2 | tRNA D-loop | DV | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | U | 20 | A | 21 | G | 22 | cWW | ncSH | ||
| 7 | HL_4TUE_033 | 4TUE | 0.3427 | 2 | tRNA D-loop | QV | tRNA | C | 12 | A | 13 | G | 14 | C | 15 | C | 16 | U | 17 | U | 20 | A | 21 | G | 22 | cWW | cWS | ||
| 8 | HL_4UY8_072 | 4UY8 | 0.5239 | 2 | V | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | U | 20 | A | 21 | G | 22 | cWW | cWS | ntSH | ||
| 9 | HL_2ZUE_001 | 2ZUE | 1.0524 | 3 | tRNA D-loop | B | tRNA-Arg | U | 913 | A | 914 | G | 915 | C | 916 | C | 917 | A | 917|||A | C | 920|||A | A | 921 | G | 922 | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCUGGUAG | 6 |
| CAGUUGGUUAG | 1 |
| CAGCCCGGUAG | 1 |
| UAGCCAGGACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCUGGUA | 6 |
| AGUUGGUUA | 1 |
| AGCCCGGUA | 1 |
| AGCCAGGACA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (4)
- tRNA D-loop (H) (4)
- (1)
- Basepair signature
- cWW-cWS-R-R-R-R-R
- Heat map statistics
- Min 0.31 | Avg 0.56 | Max 1.12
Coloring options: