HL_3J9W_081

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUAGCAAAAA

Length

11 nucleotides

Bulged bases

3J9W|1|BA|C|1811, 3J9W|1|BA|A|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77780.1

Basepair signature

cWW-tWH-tWH-R

Number of instances in this motif group

13

Unit IDs

3J9W|1|BA|U|1806
3J9W|1|BA|U|1807
3J9W|1|BA|U|1808
3J9W|1|BA|A|1809
3J9W|1|BA|G|1810
3J9W|1|BA|C|1811
3J9W|1|BA|A|1812
3J9W|1|BA|A|1813
3J9W|1|BA|A|1814
3J9W|1|BA|A|1815
3J9W|1|BA|A|1816

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AZ

MifM

Chain B6

50S ribosomal protein bL34

Chain BD

50S ribosomal protein uL2