HL_3J9W_102

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3J9W|1|BA|G|2780, 3J9W|1|BA|C|2784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69076.1

Basepair signature

cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

3J9W|1|BA|C|2774
3J9W|1|BA|U|2775
3J9W|1|BA|G|2776
3J9W|1|BA|A|2777
3J9W|1|BA|A|2778
3J9W|1|BA|A|2779
3J9W|1|BA|G|2780
3J9W|1|BA|C|2781
3J9W|1|BA|A|2782
3J9W|1|BA|U|2783
3J9W|1|BA|C|2784
3J9W|1|BA|U|2785
3J9W|1|BA|A|2786
3J9W|1|BA|A|2787
3J9W|1|BA|G|2788

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B8

50S ribosomal protein bL36

Chain BH

50S ribosomal protein uL6

Chain BM

50S ribosomal protein uL13