HL_3J9Z_009

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

3J9Z|1|LA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_009 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1747

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

3J9Z|1|LA|C|305
3J9Z|1|LA|U|306
3J9Z|1|LA|G|307
3J9Z|1|LA|G|308
3J9Z|1|LA|A|309
3J9Z|1|LA|A|310
3J9Z|1|LA|A|311
3J9Z|1|LA|G|312

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LS

50S ribosomal protein L24