HL_3J9Z_011

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

3J9Z|1|LA|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1442

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

3J9Z|1|LA|G|327
3J9Z|1|LA|U|328
3J9Z|1|LA|G|329
3J9Z|1|LA|A|330
3J9Z|1|LA|C|331
3J9Z|1|LA|A|332
3J9Z|1|LA|G|333
3J9Z|1|LA|C|334
3J9Z|1|LA|C|335

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L6

50S ribosomal protein L4

Chain LS

50S ribosomal protein L24