HL_3J9Z_012

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

3J9Z|1|LA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_012 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.463

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3J9Z|1|LA|G|381
3J9Z|1|LA|A|382
3J9Z|1|LA|C|383
3J9Z|1|LA|A|384
3J9Z|1|LA|C|385
3J9Z|1|LA|G|386
3J9Z|1|LA|U|387
3J9Z|1|LA|G|388
3J9Z|1|LA|G|389
3J9Z|1|LA|U|390
3J9Z|1|LA|A|391
3J9Z|1|LA|U|392
3J9Z|1|LA|C|393

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LV

50S ribosomal protein L28