HL_3J9Z_016

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

3J9Z|1|LA|C|544, 3J9Z|1|LA|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_016 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3404

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

3J9Z|1|LA|G|543
3J9Z|1|LA|C|544
3J9Z|1|LA|U|545
3J9Z|1|LA|U|546
3J9Z|1|LA|A|547
3J9Z|1|LA|G|548
3J9Z|1|LA|G|549
3J9Z|1|LA|C|550

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LF

50S ribosomal protein L13

Chain LP

50S ribosomal protein L21