HL_3J9Z_028

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

3J9Z|1|LA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_028 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.2035

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3J9Z|1|LA|C|1064
3J9Z|1|LA|U|1065
3J9Z|1|LA|U|1066
3J9Z|1|LA|A|1067
3J9Z|1|LA|G|1068
3J9Z|1|LA|A|1069
3J9Z|1|LA|A|1070
3J9Z|1|LA|G|1071
3J9Z|1|LA|C|1072
3J9Z|1|LA|A|1073
3J9Z|1|LA|G|1074

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L8

50S ribosomal protein L6

Chain LE

50S ribosomal protein L11

Chain S1

Elongation factor G