HL_3J9Z_045

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

3J9Z|1|LA|A|1780, 3J9Z|1|LA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_045 not in the Motif Atlas

Homologous match to HL_9DFE_043

Geometric discrepancy: 0.4526

The information below is about HL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

3J9Z|1|LA|U|1777
3J9Z|1|LA|U|1778
3J9Z|1|LA|U|1779
3J9Z|1|LA|A|1780
3J9Z|1|LA|U|1781
3J9Z|1|LA|U|1782
3J9Z|1|LA|A|1783
3J9Z|1|LA|A|1784
3J9Z|1|LA|A|1785
3J9Z|1|LA|A|1786
3J9Z|1|LA|A|1787

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L3

50S ribosomal protein L34

Chain LN

50S ribosomal protein L2