HL_3J9Z_050

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGCAGAUGC

Length

10 nucleotides

Bulged bases

3J9Z|1|LA|C|2030, 3J9Z|1|LA|A|2031, 3J9Z|1|LA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_050 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.2051

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

3J9Z|1|LA|G|2027
3J9Z|1|LA|U|2028
3J9Z|1|LA|G|2029
3J9Z|1|LA|C|2030
3J9Z|1|LA|A|2031
3J9Z|1|LA|G|2032
3J9Z|1|LA|A|2033
3J9Z|1|LA|U|2034
3J9Z|1|LA|G|2035
3J9Z|1|LA|C|2036

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L32

Chain LX

50S ribosomal protein L3