HL_3J9Z_054

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

3J9Z|1|LA|A|2268, 3J9Z|1|LA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_054 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.5448

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

3J9Z|1|LA|C|2264
3J9Z|1|LA|U|2265
3J9Z|1|LA|A|2266
3J9Z|1|LA|A|2267
3J9Z|1|LA|A|2268
3J9Z|1|LA|G|2269
3J9Z|1|LA|A|2270
3J9Z|1|LA|G|2271
3J9Z|1|LA|U|2272
3J9Z|1|LA|A|2273
3J9Z|1|LA|A|2274
3J9Z|1|LA|C|2275
3J9Z|1|LA|G|2276

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LI

50S ribosomal protein L16

Chain LU

50S ribosomal protein L27