HL_3J9Z_055

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_055 not in the Motif Atlas

Homologous match to HL_7A0S_054

Geometric discrepancy: 0.5915

The information below is about HL_7A0S_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3J9Z|1|LA|G|2303
3J9Z|1|LA|G|2304
3J9Z|1|LA|U|2305
3J9Z|1|LA|C|2306
3J9Z|1|LA|G|2307
3J9Z|1|LA|G|2308
3J9Z|1|LA|A|2309
3J9Z|1|LA|C|2310
3J9Z|1|LA|A|2311
3J9Z|1|LA|U|2312
3J9Z|1|LA|C|2313

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L7

50S ribosomal protein L5