HL_3J9Z_064

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_064 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.1439

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

3J9Z|1|LA|C|2658
3J9Z|1|LA|G|2659
3J9Z|1|LA|A|2660
3J9Z|1|LA|G|2661
3J9Z|1|LA|A|2662
3J9Z|1|LA|G|2663

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L8

50S ribosomal protein L6

Chain S1

Elongation factor G