HL_3J9Z_066

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

3J9Z|1|LA|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_066 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1201

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

3J9Z|1|LA|C|2745
3J9Z|1|LA|U|2746
3J9Z|1|LA|G|2747
3J9Z|1|LA|A|2748
3J9Z|1|LA|A|2749
3J9Z|1|LA|A|2750
3J9Z|1|LA|G|2751
3J9Z|1|LA|C|2752
3J9Z|1|LA|A|2753
3J9Z|1|LA|U|2754
3J9Z|1|LA|C|2755
3J9Z|1|LA|U|2756
3J9Z|1|LA|A|2757
3J9Z|1|LA|A|2758
3J9Z|1|LA|G|2759

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L36

Chain L8

50S ribosomal protein L6