HL_3J9Z_095

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

3J9Z|1|SA|C|841, 3J9Z|1|SA|U|843, 3J9Z|1|SA|G|844, 3J9Z|1|SA|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_095 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3046

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

3J9Z|1|SA|C|840
3J9Z|1|SA|C|841
3J9Z|1|SA|U|842
3J9Z|1|SA|U|843
3J9Z|1|SA|G|844
3J9Z|1|SA|A|845
3J9Z|1|SA|G|846

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SB

30S ribosomal protein S2

Chain SR

30S ribosomal protein S18