HL_3J9Z_113

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

3J9Z|1|LA|U|958, 3J9Z|1|LA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_113 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.3721

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

3J9Z|1|LA|U|955
3J9Z|1|LA|G|956
3J9Z|1|LA|C|957
3J9Z|1|LA|U|958
3J9Z|1|LA|A|959
3J9Z|1|LA|A|960
3J9Z|1|LA|C|961
3J9Z|1|LA|G|962

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LI

50S ribosomal protein L16