HL_3JA1_001
3D structure
- PDB id
- 3JA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGCUAAUCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JA1_001 not in the Motif Atlas
- Homologous match to HL_7A0S_001
- Geometric discrepancy: 0.4779
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
3JA1|1|LA|U|59
3JA1|1|LA|G|60
3JA1|1|LA|C|61
3JA1|1|LA|U|62
3JA1|1|LA|A|63
3JA1|1|LA|A|64
3JA1|1|LA|U|65
3JA1|1|LA|C|66
3JA1|1|LA|U|67
3JA1|1|LA|G|68
Current chains
- Chain LA
- 23S ribosomal RNA
Nearby chains
- Chain L0
- 50S ribosomal protein L29
- Chain L5
- 50S ribosomal protein L34
- Chain LV
- 50S ribosomal protein L23
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