HL_3JA1_006

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

3JA1|1|LA|A|196

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_006 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.2185

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3JA1|1|LA|G|194
3JA1|1|LA|A|195
3JA1|1|LA|A|196
3JA1|1|LA|A|197
3JA1|1|LA|C|198
3JA1|1|LA|A|199
3JA1|1|LA|U|200
3JA1|1|LA|C|201

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LN

50S ribosomal protein L15

Chain LZ

50S ribosomal protein L28

Chain S2

Transfer RNA; tRNA