HL_3JA1_021

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_021 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.3195

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

3JA1|1|LA|G|712
3JA1|1|LA|G|713
3JA1|1|LA|U|714
3JA1|1|LA|A|715
3JA1|1|LA|A|716
3JA1|1|LA|C|717
3JA1|1|LA|A|718
3JA1|1|LA|C|719

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain SA

Small subunit ribosomal RNA; SSU rRNA

Chain SO

30S ribosomal protein S15