HL_3JA1_026

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

3JA1|1|LA|U|958, 3JA1|1|LA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_026 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2968

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JA1|1|LA|G|954
3JA1|1|LA|U|955
3JA1|1|LA|G|956
3JA1|1|LA|C|957
3JA1|1|LA|U|958
3JA1|1|LA|A|959
3JA1|1|LA|A|960
3JA1|1|LA|C|961
3JA1|1|LA|G|962
3JA1|1|LA|U|963

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LB

5S ribosomal RNA; 5S rRNA

Chain LO

50S ribosomal protein L16