HL_3JA1_032

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_032 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1803

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

3JA1|1|LA|G|1281
3JA1|1|LA|U|1282
3JA1|1|LA|G|1283
3JA1|1|LA|A|1284
3JA1|1|LA|A|1285
3JA1|1|LA|A|1286
3JA1|1|LA|A|1287
3JA1|1|LA|G|1288
3JA1|1|LA|C|1289

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L3

50S ribosomal protein L32

Chain LP

50S ribosomal protein L17

Chain LU

50S ribosomal protein L22