HL_3JA1_046

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_046 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.2956

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

3JA1|1|LA|C|1806
3JA1|1|LA|G|1807
3JA1|1|LA|A|1808
3JA1|1|LA|A|1809
3JA1|1|LA|A|1810
3JA1|1|LA|G|1811

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LD

50S ribosomal protein L2

Chain LZ

50S ribosomal protein L28