HL_3JA1_048

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAACCAUAAC

Length

11 nucleotides

Bulged bases

3JA1|1|LA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_048 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.5493

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

3JA1|1|LA|G|1910
3JA1|1|LA|U|1911
3JA1|1|LA|A|1912
3JA1|1|LA|A|1913
3JA1|1|LA|C|1914
3JA1|1|LA|C|1915
3JA1|1|LA|A|1916
3JA1|1|LA|U|1917
3JA1|1|LA|A|1918
3JA1|1|LA|A|1919
3JA1|1|LA|C|1920

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain S1

mRNA

Chain S3

Elongation factor G

Chain SA

Small subunit ribosomal RNA; SSU rRNA