HL_3JA1_049

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

3JA1|1|LA|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_049 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1533

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

3JA1|1|LA|G|1949
3JA1|1|LA|G|1950
3JA1|1|LA|U|1951
3JA1|1|LA|A|1952
3JA1|1|LA|A|1953
3JA1|1|LA|G|1954
3JA1|1|LA|U|1955
3JA1|1|LA|U|1956
3JA1|1|LA|C|1957

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LM

50S ribosomal protein L14

Chain SA

Small subunit ribosomal RNA; SSU rRNA