HL_3JA1_051

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

3JA1|1|LA|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_051 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.5097

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

3JA1|1|LA|A|2142
3JA1|1|LA|C|2143
3JA1|1|LA|G|2144
3JA1|1|LA|C|2145
3JA1|1|LA|C|2146
3JA1|1|LA|A|2147
3JA1|1|LA|G|2148
3JA1|1|LA|U|2149

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LC

50S ribosomal protein L1

Chain SG

30S ribosomal protein S7

Chain SK

30S ribosomal protein S11