HL_3JA1_056

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_056 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.2007

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

3JA1|1|LA|U|2324
3JA1|1|LA|G|2325
3JA1|1|LA|C|2326
3JA1|1|LA|A|2327
3JA1|1|LA|A|2328
3JA1|1|LA|U|2329
3JA1|1|LA|G|2330
3JA1|1|LA|G|2331

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LO

50S ribosomal protein L16

Chain LY

50S ribosomal protein L27