HL_3JA1_061

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

3JA1|1|LA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_061 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.2591

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

3JA1|1|LA|U|2528
3JA1|1|LA|G|2529
3JA1|1|LA|A|2530
3JA1|1|LA|A|2531
3JA1|1|LA|G|2532
3JA1|1|LA|U|2533
3JA1|1|LA|A|2534
3JA1|1|LA|G|2535

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L7

50S ribosomal protein L36

Chain LH

50S ribosomal protein L6

Chain S3

Elongation factor G