HL_3JA1_080

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

3JA1|1|SA|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_080 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.2309

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

3JA1|1|SA|G|259
3JA1|1|SA|G|260
3JA1|1|SA|U|261
3JA1|1|SA|A|262
3JA1|1|SA|A|263
3JA1|1|SA|C|264
3JA1|1|SA|G|265
3JA1|1|SA|G|266
3JA1|1|SA|C|267

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SQ

30S ribosomal protein S17

Chain ST

30S ribosomal protein S20