HL_3JA1_082

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

3JA1|1|SA|C|330, 3JA1|1|SA|G|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_082 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1862

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3JA1|1|SA|A|320
3JA1|1|SA|A|321
3JA1|1|SA|C|322
3JA1|1|SA|U|323
3JA1|1|SA|G|324
3JA1|1|SA|A|325
3JA1|1|SA|G|326
3JA1|1|SA|A|327
3JA1|1|SA|C|328
3JA1|1|SA|A|329
3JA1|1|SA|C|330
3JA1|1|SA|G|331
3JA1|1|SA|G|332
3JA1|1|SA|U|333

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SP

30S ribosomal protein S16

Chain ST

30S ribosomal protein S20