HL_3JA1_100

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_100 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.4774

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

3JA1|1|SA|G|1134
3JA1|1|SA|U|1135
3JA1|1|SA|C|1136
3JA1|1|SA|C|1137
3JA1|1|SA|G|1138
3JA1|1|SA|G|1139
3JA1|1|SA|C|1140

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SC

30S ribosomal protein S3

Chain SI

30S ribosomal protein S9

Chain SJ

30S ribosomal protein S10