3D structure

PDB id
3JAG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CAUGGAAGUCG
Length
11 nucleotides
Bulged bases
3JAG|1|5|A|1984
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAG_034 not in the Motif Atlas
Homologous match to HL_5TBW_027
Geometric discrepancy: 0.4299
The information below is about HL_5TBW_027
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19210.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
6

Unit IDs

3JAG|1|5|C|1978
3JAG|1|5|A|1979
3JAG|1|5|U|1980
3JAG|1|5|G|1981
3JAG|1|5|G|1982
3JAG|1|5|A|1983
3JAG|1|5|A|1984
3JAG|1|5|G|1985
3JAG|1|5|U|1986
3JAG|1|5|C|1987
3JAG|1|5|G|1988

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain I
uL16
Chain ii
eRF1
Chain t
uL11

Coloring options:


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