3D structure

PDB id
3JAG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
UGUAACAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAG_035 not in the Motif Atlas
Homologous match to HL_8C3A_028
Geometric discrepancy: 0.2565
The information below is about HL_8C3A_028
Detailed Annotation
GNRA wlth tandem sheared
Broad Annotation
No text annotation
Motif group
HL_27115.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
22

Unit IDs

3JAG|1|5|U|2006
3JAG|1|5|G|2007
3JAG|1|5|U|2008
3JAG|1|5|A|2009
3JAG|1|5|A|2010
3JAG|1|5|C|2011
3JAG|1|5|A|2012
3JAG|1|5|A|2013

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain ii
eRF1
Chain m
eL40
Chain t
uL11

Coloring options:


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