HL_3JAG_089

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

3JAG|1|9|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAG_089 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.5458

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3JAG|1|9|G|288
3JAG|1|9|G|289
3JAG|1|9|U|290
3JAG|1|9|G|291
3JAG|1|9|A|292
3JAG|1|9|C|293
3JAG|1|9|U|294
3JAG|1|9|C|295

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain GG

eS6

Chain LL

uS17