HL_8C3A_197

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8C3A|1|CM|U|247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8C3A|1|CM|G|241
8C3A|1|CM|A|242
8C3A|1|CM|U|243
8C3A|1|CM|G|244
8C3A|1|CM|A|245
8C3A|1|CM|U|246
8C3A|1|CM|U|247
8C3A|1|CM|C|248

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CY

40S ribosomal protein S11A