HL_3JAG_111

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

3JAG|1|9|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAG_111 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2836

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3JAG|1|9|A|1295
3JAG|1|9|U|1296
3JAG|1|9|U|1297
3JAG|1|9|G|1298
3JAG|1|9|A|1299
3JAG|1|9|U|1300
3JAG|1|9|A|1301
3JAG|1|9|G|1302
3JAG|1|9|C|1303
3JAG|1|9|U|1304

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31