3D structure

PDB id
3JAH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.45 Å

Loop

Sequence
GACUCAACAC
Length
10 nucleotides
Bulged bases
3JAH|1|9|A|1253
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAH_110 not in the Motif Atlas
Homologous match to HL_4V88_212
Geometric discrepancy: 0.1292
The information below is about HL_4V88_212
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

3JAH|1|9|G|1245
3JAH|1|9|A|1246
3JAH|1|9|C|1247
3JAH|1|9|U|1248
3JAH|1|9|C|1249
3JAH|1|9|A|1250
3JAH|1|9|A|1251
3JAH|1|9|C|1252
3JAH|1|9|A|1253
3JAH|1|9|C|1254

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain 2
Transfer RNA; tRNA
Chain QQ
uS9
Chain UU
uS10
Chain dd
uS14
Chain ii
eRF1

Coloring options:


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