HL_3JAH_111

3D structure

PDB id

3JAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

3JAH|1|9|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAH_111 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2758

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3JAH|1|9|A|1295
3JAH|1|9|U|1296
3JAH|1|9|U|1297
3JAH|1|9|G|1298
3JAH|1|9|A|1299
3JAH|1|9|U|1300
3JAH|1|9|A|1301
3JAH|1|9|G|1302
3JAH|1|9|C|1303
3JAH|1|9|U|1304

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31