3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CUUGGGAAUG
Length
10 nucleotides
Bulged bases
3JAI|1|5|G|294, 3JAI|1|5|A|295, 3JAI|1|5|A|296
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_014 not in the Motif Atlas
Homologous match to HL_5TBW_008
Geometric discrepancy: 0.1389
The information below is about HL_5TBW_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

3JAI|1|5|C|289
3JAI|1|5|U|290
3JAI|1|5|U|291
3JAI|1|5|G|292
3JAI|1|5|G|293
3JAI|1|5|G|294
3JAI|1|5|A|295
3JAI|1|5|A|296
3JAI|1|5|U|297
3JAI|1|5|G|298

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain L
eL13
Chain N
eL15
Chain Q
eL18
Chain a
uL15
Chain o
eL42

Coloring options:


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