3D structure

PDB id
3JAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
CGCAGCAG
Length
8 nucleotides
Bulged bases
3JAI|1|5|C|2794, 3JAI|1|5|G|2796, 3JAI|1|5|A|2798
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAI_049 not in the Motif Atlas
Homologous match to HL_5TBW_041
Geometric discrepancy: 0.1887
The information below is about HL_5TBW_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56817.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

3JAI|1|5|C|2792
3JAI|1|5|G|2793
3JAI|1|5|C|2794
3JAI|1|5|A|2795
3JAI|1|5|G|2796
3JAI|1|5|C|2797
3JAI|1|5|A|2798
3JAI|1|5|G|2799

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain C
uL4
Chain P
uL22
Chain j
eL37
Chain l
eL39

Coloring options:


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