HL_3JAI_078

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

3JAI|1|5|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_078 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3744

The information below is about HL_6VMY_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

3JAI|1|5|C|5021
3JAI|1|5|U|5022
3JAI|1|5|C|5023
3JAI|1|5|C|5024
3JAI|1|5|C|5025
3JAI|1|5|U|5026
3JAI|1|5|C|5027
3JAI|1|5|G|5028

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain II

eS8

Chain U

eL22