HL_3JAI_089

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

3JAI|1|9|A|292, 3JAI|1|9|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAI_089 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.5701

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3JAI|1|9|G|288
3JAI|1|9|G|289
3JAI|1|9|U|290
3JAI|1|9|G|291
3JAI|1|9|A|292
3JAI|1|9|C|293
3JAI|1|9|U|294
3JAI|1|9|C|295

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain GG

eS6

Chain LL

uS17